The 2016–17 Southern Jaguars basketball team represented Southern University during the 2016–17 NCAA Division I men's basketball season. The Jaguars, led by sixth-year head coach Roman Banks, played their home games at the F. G. Clark Center in Baton Rouge, Louisiana as members of the Southwestern Athletic Conference. They finished the season 15–18, 10–8 in SWAC play to finish in a four-way tie for third place. As the 3-seed in the SWAC tournament they defeated Jackson State before losing in the semifinals to Alcorn State.