About: Cell-based models

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Cell-based models are mathematical models that represent biological cells as a discrete entities. Within the field of computational biology they are often simply called agent-based models of which they are a specific application and they are used for simulating the biomechanics of multicellular structures such as tissues. to study the influence of these behaviors on how tissues are organised in time and space. Their main advantage is the easy integration of cell level processes such as cell division, intracellular processes and single-cell variability within a cell population.

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rdfs:label	Cell-based models (en)
rdfs:comment	Cell-based models are mathematical models that represent biological cells as a discrete entities. Within the field of computational biology they are often simply called agent-based models of which they are a specific application and they are used for simulating the biomechanics of multicellular structures such as tissues. to study the influence of these behaviors on how tissues are organised in time and space. Their main advantage is the easy integration of cell level processes such as cell division, intracellular processes and single-cell variability within a cell population. (en)
dcterms:subject	Biophysics Numerical analysis Simulation software Cells Computational biology Tissues (biology)
Wikipage page ID	53895456 (xsd:integer)
Wikipage revision ID	1122094551 (xsd:integer)
Link from a Wikipage to another Wikipage	Python (programming language) Scala (programming language) Epithelium Morphogenesis Julia (programming language) Perl Continuum mechanics Biophysics Gene regulatory network Apoptosis MATLAB CompuCell3D Computational biology C++ CUDA C (programming language) Cell (biology) Agent-based model Numerical analysis Finite volume method Force Partial differential equation Cell division Cell migration Cell proliferation Cell signaling Cellular Potts model Cellular automaton Graphics processing unit Simulation software JavaScript Java (programming language) Single-cell variability Cells Computational biology Tissues (biology) Biomechanics High-performance computing Tissue (biology) Animal embryonic development OpenMP Ordinary differential equation Mathematical model Message Passing Interface Extracellular matrix Immersed boundary method Finite element method Cellular communication
Link from a Wikipage to an external page	http://rejniak.net/RejniakLab/LabsTools.html http://tigacenter.bioquant.uni-heidelberg.de/downloads.html%3C/s%3E http://timothy.icm.edu.pl/downloads.html%3C/s%3E https://ccl.northwestern.edu/netlogo/ https://morpheus.gitlab.io/ https://tanakas.bitbucket.io/lbibcell/ https://www.hoehme.com/software/tisim https://github.com/CompuCell3D/CompuCell3D https://github.com/DamCB/tyssue https://github.com/Luthey-Schulten-Lab/Lattice_Microbes%3Cnowiki/%3Ehttps:/github.com/Luthey-Schulten-Lab/Minimal_Cell https://github.com/MathCancer/PhysiCell https://github.com/NetLogo/NetLogo https://github.com/ProfMJSimpson/4DFUCCI https://github.com/RobertGregg/CellularPotts.jl https://github.com/URDME/urdme https://github.com/germannp/yalla https://github.com/ingewortel/artistoo https://github.com/juliendelile/MECAGEN https://github.com/luckyphill/EdgeBased https://github.com/rmerks/VirtualLeaf2021 https://github.com/torressancheza/ias https://github.com/virtualcell/vcell https://docs.julialang.org/en/v1/stdlib/Distributed/
sameAs	Cell-based models Cell-based models
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has abstract	Cell-based models are mathematical models that represent biological cells as a discrete entities. Within the field of computational biology they are often simply called agent-based models of which they are a specific application and they are used for simulating the biomechanics of multicellular structures such as tissues. to study the influence of these behaviors on how tissues are organised in time and space. Their main advantage is the easy integration of cell level processes such as cell division, intracellular processes and single-cell variability within a cell population. Continuum-based models (PDE-based) models have also been developed – in particular, for cardiomyocytes and neurons. These represent the cells through explicit geometries and take into account spatial distributions of both intracellular and extracellular processes. They capture, depending on the research question and areas, ranges from a few to many thousand cells. In particular, the framework for electrophysiological models of cardiac cells is well-developed and made highly efficient using high-performance computing. (en)
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page length (characters) of wiki page	24940 (xsd:nonNegativeInteger)
foaf:isPrimaryTopicOf	wikipedia-en:Cell-based_models
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