| ShortSummary
| - While Subaru, Tsukasa and the party arrive at the cathedral, Morganna sends Sora and four guardians after them. Macha sacrifices herself to save the others, before Morganna transports Tsukasa, Subaru and Mimiru to an unknown area. (en)
- The investigation into the Key of the Twilight begins, and it seems they will get the help of the hacker Helba. Tsukasa encounters a player who asks him to watch her Puchiguso, who becomes sicker. (en)
- Tsukasa's guardian has been uncontrollably attacking characters. Wanting to talk with him, Subaru gives the order to make him a 'wanted' on all servers of The World. (en)
- Tsukasa is shocked to see Aura covered in vines, as Morganna asks him if he really wants to return to the world. Bear and Subaru discuss what will happen to Tsukasa's player when and if he wakes up. (en)
- BT asks Crim to meet outside the game and is rejected. She is upset at Subaru. Later, she joins some characters who want her help only to find out they have tricked her. Tsukasa rescues her and recognizes the meaning of her name. (en)
- One month after the events of .hack//Quarantine, Tsukasa returns to "The World" for the first time, while the revived Sora joins the others. The episode ends with everyone celebrating the party at Net Slum hosted by Helba. (en)
- Wanting to meet up with Tsukasa once more, Mimiru sends him mail asking him to meet at a certain place. She intends to wait there, for however long, until he appears. BT meets Crim and ask for his help in searching for the Key of the Twilight. (en)
- Sora sacrifices himself to distract Morganna, allowing Tsukasa, Subaru, Mimiru and the awakened Aura to escape. Tsukasa, now confirmed to be a girl, logs out from the game and wakes up from the coma. She meets Subaru's player in a wheelchair. (en)
- Bear, Mimiru and Subaru travel to another fragment of the AI Harald, encounter another unbeatable monster, but are saved by Balmung. From Harald, they learn about Aura and Tsukasa. (en)
- BT suggests Tsukasa is related to the legendary item, the Key of the Twilight and Sora suspects it. Bear tells Subaru that Tsukasa may be a victim. (en)
- Macha realizes her mistake, when Tsukasa becomes catatonic. When a group of distorted monsters appear in The World, the others decide to visit Helba and AI Harald. (en)
- The players have figured out how to open the Twilight Eye, and to follow the path it reveals. BT and Crim are going in, but BT is plotting something with Sora. With the help of Helba, Bear, Mimiru and Tsukasa follow them. (en)
- In captivity, Subaru talks with Tsukasa and she finds out just how real The World has become to him. She decides to release him, but they are interrupted as Sora arrives to 'rescue' him. (en)
- Mimiru and Bear take on a non-fighting quest, forming a party with Tsukasa. Sora plans to pursue him. (en)
- Tsukasa manages to pass through the gate with the others, when Crim tells him about Subaru's condition. The gate appears and they enter, except Subaru who is waiting for Tsukasa. (en)
- Tsukasa and Subaru arrive to the domain, only to find Aura gone. Meanwhile, the others follow Bear's suggestion to finalize the search for the Key of the Twilight. Subaru tells Mimiru about Aura, but she thinks she should not have left Tsukasa alone. Morganna forces Tsukasa to stay on the bed. (en)
- Silver Knight foils every attempt Subaru makes to meet Tsukasa and his friends, believing that someone of her stature and responsibility should have nothing to do with any illegal character. When Subaru becomes aware of this and realizes how far they have deviated from their original purpose, she decides to disband the Crimson Knights. (en)
- Mimiru meets an inexperienced player, A20, and helps her to learn the ways of The World. Through her, Mimiru answers her own question of why she plays the game. (en)
- Bear deals with being an inadequate father when BT tells him that may explain his concern for Tsukasa. Subaru and Tsukasa become closer, while BT and Crim delve further into BBS clues concerning the Key of the Twilight. (en)
- Tsukasa learns to control his guardian while hiding. Silver Knight and Sora plot a double-cross for the Knights to arrest Tsukasa. (en)
- Tsukasa arrives and the party reaches Net Slum, Helba's domain. Helba reveals Morganna's plan, and Tsukasa reveals to Subaru that he is a girl in real life. The party plans to defend Subaru from Morganna, since Morganna wants Tsukasa to be in despair. Tsukasa decides that he wants to meet Subaru in real life. (en)
- Subaru wanders The World, recalling her first steps in the game and how she and Crim founded the Crimson Knights. Subaru is attacked by another character and Tsukasa finds her injured. As they spend time together, Subaru recalls her memory. (en)
- Mimiru and Bear are concerned about Tsukasa's inability to log out. Meanwhile, the Crimson Knights treat him as an illegal character. Tsukasa shows his guardian monster to Mimiru and Bear. (en)
- Tsukasa logs in and entering Morganna's domain. He learns that he survived in the place and begins to doubt his own existence. Tsukasa finds Subaru and she reassures him of the situation. (en)
- After opening the Eye, BT, Crim, Bear, Mimiru and Tsukasa find a hidden area in search for the key. They find a fragmented AI version of "Harald Hoerwick". After speaking to him, the place begins to collapse. Bear falls down from the bridge and Tsukasa sacrifices himself to save Mimiru from the guardian whom Macha summons. Tsukasa logs off from the game immediately following the data drain. (en)
- An overview of the series so far using a series of flashbacks. (en)
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