About: LocDB

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LocDB is an expert-curated database that collects experimental annotations for the subcellular localization of proteins in Homo sapiens (human) and Arabidopsis thaliana (Weed). The database also contains predictions of subcellular localization from a variety of state-of-the-art prediction methods for all proteins with experimental information.

Attributes	Values
rdf:type	Thing schema:CreativeWork work wikidata:Q386724 Database dul:InformationObject Biological database yago:Abstraction100002137 yago:Chemical114806838 yago:Compound114818238 yago:Macromolecule114944888 yago:Material114580897 yago:Matter100020827 yago:Molecule114682133 yago:OrganicCompound114727670 yago:Part113809207 yago:PhysicalEntity100001930 yago:Protein114728724 yago:Relation100031921 yago:Substance100019613 yago:Thing100002452 yago:Unit109465459 yago:WikicatProteins
rdfs:label	LocDB (en)
rdfs:comment	LocDB is an expert-curated database that collects experimental annotations for the subcellular localization of proteins in Homo sapiens (human) and Arabidopsis thaliana (Weed). The database also contains predictions of subcellular localization from a variety of state-of-the-art prediction methods for all proteins with experimental information. (en)
foaf:homepage	http://www.rostlab.org/services/locDB
foaf:depiction
dc:description	experimental annotations of localization
dct:subject	Biological databases Protein classification Protein targeting
Wikipage page ID	31312165 (xsd:integer)
Wikipage revision ID	900581590 (xsd:integer)
Link from a Wikipage to another Wikipage	Homo sapiens Protein subcellular localization prediction Columbia University Arabidopsis thaliana Protein targeting Biological databases Protein classification Protein targeting
Link from a Wikipage to an external page	http://www.rostlab.org/services/locDB http://www.rostlab.org/services/locDB/search.php
sameAs	LocDB LocDB LocDB LocDB
webservice	http://www.rostlab.org/services/locDB/search.php
dbp:wikiPageUsesTemplate	dbt:Biodatabase-stub dbt:Infobox_biodatabase dbt:Reflist
thumbnail	wiki-commons:Special:FilePath/Database.png?width=300
author	Shruti Rastogi (en)
citation	Rastogi & al. (en)
description	experimental annotations of localization (en)
format	MySQL database (en)
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Organism	Homo sapiens Arabidopsis thaliana
released	2010 (xsd:integer)
title	LocDB (en)
url	http://www.rostlab.org/services/locDB
version	Release 1.0 (en)
Center	Columbia University
has abstract	LocDB is an expert-curated database that collects experimental annotations for the subcellular localization of proteins in Homo sapiens (human) and Arabidopsis thaliana (Weed). The database also contains predictions of subcellular localization from a variety of state-of-the-art prediction methods for all proteins with experimental information. Proteins are the fundamental functional components of cells. They are responsible for transforming genetic information into physical reality. These macromolecules mediate gene regulation, enzymatic catalysis, cellular metabolism, DNA replication, and transport of nutrients, recognition, and transmission of signals. The interpretation of this wealth of data to elucidate protein function in post-genomic era is a fundamental challenge. To date, even for the most well-studied organisms such as yeast, about one-fourth of the proteins remain uncharacterized. A major obstacle in experimentally determining protein function is that the studies require enormous resources. Hence, the gap between the amount of sequences deposited in databases and the experimental characterization of the corresponding proteins is ever-growing. Bioinformatics plays a central role in bridging this sequence-function gap through the development of tools for faster and more effective prediction of protein function. This repository effectively fills the gap between experimental annotations and predictions and provides a bigger and more reliable dataset for the testing of new prediction methods. (en)
laboratory	Department of Biochemistry and Molecular Biophysics (en)
gold:hypernym	Database
prov:wasDerivedFrom	wikipedia-en:LocDB?oldid=900581590&ns=0
page length (characters) of wiki page	2877 (xsd:nonNegativeInteger)
title	LocDB (en)
foaf:isPrimaryTopicOf	wikipedia-en:LocDB
is Link from a Wikipage to another Wikipage of	Index of biophysics articles Protein targeting
is foaf:primaryTopic of	wikipedia-en:LocDB

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