About: Metabolomic Pathway Analysis

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Metabolomic Pathway Analysis, shortened to MetPA, is a freely available, user-friendly web server to assist with the identification analysis and visualization of metabolic pathways using metabolomic data. MetPA makes use of advances originally developed for pathway analysis in microarray experiments and applies those principles and concepts to the analysis of metabolic pathways. For input, MetPA expects either a list of compound names (identified as statistically significant or significant perturbed) or a metabolite concentration table with phenotypic labels (i.e. sick vs. healthy). The list of compounds can include common names, HMDB IDs or KEGG IDs with one compound per row. Compound concentration tables must have samples in rows and compounds in columns. MetPA’s output is a series of ta

Attributes	Values
rdf:type	Thing schema:CreativeWork work wikidata:Q386724 Database dul:InformationObject Biological database
rdfs:label	Metabolomic Pathway Analysis (en)
rdfs:comment	Metabolomic Pathway Analysis, shortened to MetPA, is a freely available, user-friendly web server to assist with the identification analysis and visualization of metabolic pathways using metabolomic data. MetPA makes use of advances originally developed for pathway analysis in microarray experiments and applies those principles and concepts to the analysis of metabolic pathways. For input, MetPA expects either a list of compound names (identified as statistically significant or significant perturbed) or a metabolite concentration table with phenotypic labels (i.e. sick vs. healthy). The list of compounds can include common names, HMDB IDs or KEGG IDs with one compound per row. Compound concentration tables must have samples in rows and compounds in columns. MetPA’s output is a series of ta (en)
foaf:homepage	http://metpa.metabolomics.ca
dc:description	For metabolomic data analysis – specifically for the identification of enriched or important pathways from multiple different organisms
dcterms:subject	Biological databases
Wikipage page ID	42439027 (xsd:integer)
Wikipage revision ID	1062723979 (xsd:integer)
Link from a Wikipage to another Wikipage	MetaboAnalyst Metabolome David S. Wishart Mammals Metabolic pathway Topological data analysis Microarray Biological databases KEGG Human Metabolome Database Metabolomic Metabolic pathways Organism Organisms Metabolite Set Enrichment Analysis Microbes
Link from a Wikipage to an external page	http://metpa.metabolomics.ca
sameAs	Metabolomic Pathway Analysis Metabolomic Pathway Analysis Metabolomic Pathway Analysis
dbp:wikiPageUsesTemplate	dbt:Infobox_biodatabase dbt:Reflist
description	For metabolomic data analysis – specifically for the identification of enriched or important pathways from multiple different organisms (en)
format	Data Input: Tables of metabolite names and/or concentrations; Data Output: Graphs and tables with embedded hyperlinks (en)
frequency	-6.31152E7 (second)
title	Metabolomic Pathway Analysis (en)
url	http://metpa.metabolomics.ca
Center	University of Alberta (en)
has abstract	Metabolomic Pathway Analysis, shortened to MetPA, is a freely available, user-friendly web server to assist with the identification analysis and visualization of metabolic pathways using metabolomic data. MetPA makes use of advances originally developed for pathway analysis in microarray experiments and applies those principles and concepts to the analysis of metabolic pathways. For input, MetPA expects either a list of compound names (identified as statistically significant or significant perturbed) or a metabolite concentration table with phenotypic labels (i.e. sick vs. healthy). The list of compounds can include common names, HMDB IDs or KEGG IDs with one compound per row. Compound concentration tables must have samples in rows and compounds in columns. MetPA’s output is a series of tables indicating which pathways are significantly enriched (along with accompanying statistics) as well as a variety of graphs or pathway maps illustrating where and how certain pathways were enriched. MetPA’s graphical output uses a colorful Google-Maps visualization system that allows simple, intuitive data exploration that lets users employ a computer mouse or track pad to select, drag and place images and to seamlessly zoom in and out. Users can explore MetPA’s output using three different views or levels: 1) a metabolome view; 2) a pathway view; 3) a compound view. (en)
curation	Manually curated (en)
laboratory	David S. Wishart
prov:wasDerivedFrom	wikipedia-en:Metabolomic_Pathway_Analysis?oldid=1062723979&ns=0
page length (characters) of wiki page	6942 (xsd:nonNegativeInteger)
title	Metabolomic Pathway Analysis (en)
foaf:isPrimaryTopicOf	wikipedia-en:Metabolomic_Pathway_Analysis
is Link from a Wikipage to another Wikipage of	MetPA
is Wikipage redirect of	MetPA
is foaf:primaryTopic of	wikipedia-en:Metabolomic_Pathway_Analysis

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