About: Protein contact map

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A protein contact map represents the distance between all possible amino acid residue pairs of a three-dimensional protein structure using a binary two-dimensional matrix. For two residues and , the element of the matrix is 1 if the two residues are closer than a predetermined threshold, and 0 otherwise. Various contact definitions have been proposed: The distance between the Cα-Cα atom with threshold 6-12 Å; distance between Cβ-Cβ atoms with threshold 6-12 Å (Cα is used for Glycine); and distance between the side-chain centers of mass.

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rdfs:label	Protein contact map (en) Mapa de contato de proteína (pt)
rdfs:comment	A protein contact map represents the distance between all possible amino acid residue pairs of a three-dimensional protein structure using a binary two-dimensional matrix. For two residues and , the element of the matrix is 1 if the two residues are closer than a predetermined threshold, and 0 otherwise. Various contact definitions have been proposed: The distance between the Cα-Cα atom with threshold 6-12 Å; distance between Cβ-Cβ atoms with threshold 6-12 Å (Cα is used for Glycine); and distance between the side-chain centers of mass. (en) Um mapa de contato de proteína representa a distância entre todos os possíveis pares de resíduos de aminoácidos de uma estrutura de proteína tridimensional usando uma matriz bidimensional binária. Para dois resíduos e , o elemento da matriz é 1 se os dois resíduos estão mais próximos do que um limiar predeterminado e 0 caso contrário. Várias definições de contato foram propostas: A distância entre o átomo Cα - Cα com limiar de 6-12 Å; distância entre átomos Cβ - Cβ com limiar de 6-12 Å (Cα é usado para Glicina); e distância entre os centros de massa da cadeia lateral. (pt)
foaf:depiction
dcterms:subject	Proteomics Protein structure
Wikipage page ID	3660376 (xsd:integer)
Wikipage revision ID	1044417061 (xsd:integer)
Link from a Wikipage to another Wikipage	Beta-lactoglobulin Antiparallel (biochemistry) Beta sheet dbr:Retinol Cytochrome P450 CATH Dot plot (bioinformatics) Matrix (mathematics) Membrane (selective barrier) Membrane proteins Glycine Conformational change Crystal structure Lipocalin Machine learning Fatty acid Heme Protein structure Substrate (biochemistry) Superimposition Proteomics Amino acid Protein structure Oxygen Center of mass Direct coupling analysis Protein Ramachandran plot HB plot Binding site Tertiary structure Hydrogen bonds Hydrophobic Tertiary hydrogen bond Catalytic cycle X-ray crystallography Helices Loop (graph theory) Multiple sequence alignment Statistical coupling analysis Ångström Xenobiotic Self-similarity matrix Side chain Mutual Information Protein sequence Structural classification of proteins P450 Secondary structure Hydrogen bonding Alpha-helices NADPH Beta-sheet Secondary hydrogen bond dbr:Beta-loop dbr:CYP2B4 dbr:NADPH_cytochrome_P450_reductase
Link from a Wikipage to an external page	https://jerseysforcheapshop.com/how-to-check-protein-deficiency http://rostlab.org/services/profcon/index.php http://webclu.bio.wzw.tum.de/tmhcon/ http://www.igb.uci.edu/%3Fpage=tools&subPage=psss https://web.archive.org/web/20080503131233/http:/distill.ucd.ie/distill/ https://web.archive.org/web/20100905110709/http:/bio-cluster.iis.sinica.edu.tw/TMhit/ http://www.ics.uci.edu/~baldig/index.html
sameAs	Protein contact map Protein contact map Protein contact map Protein contact map
dbp:wikiPageUsesTemplate	dbt:Citation_needed dbt:Dead_link dbt:Reflist
thumbnail	wiki-commons:Special:FilePath/Protein_Contact_Map,_2-Color,_2QIP-A.png?width=300
has abstract	A protein contact map represents the distance between all possible amino acid residue pairs of a three-dimensional protein structure using a binary two-dimensional matrix. For two residues and , the element of the matrix is 1 if the two residues are closer than a predetermined threshold, and 0 otherwise. Various contact definitions have been proposed: The distance between the Cα-Cα atom with threshold 6-12 Å; distance between Cβ-Cβ atoms with threshold 6-12 Å (Cα is used for Glycine); and distance between the side-chain centers of mass. (en) Um mapa de contato de proteína representa a distância entre todos os possíveis pares de resíduos de aminoácidos de uma estrutura de proteína tridimensional usando uma matriz bidimensional binária. Para dois resíduos e , o elemento da matriz é 1 se os dois resíduos estão mais próximos do que um limiar predeterminado e 0 caso contrário. Várias definições de contato foram propostas: A distância entre o átomo Cα - Cα com limiar de 6-12 Å; distância entre átomos Cβ - Cβ com limiar de 6-12 Å (Cα é usado para Glicina); e distância entre os centros de massa da cadeia lateral. (pt)
prov:wasDerivedFrom	wikipedia-en:Protein_contact_map?oldid=1044417061&ns=0
page length (characters) of wiki page	16357 (xsd:nonNegativeInteger)
foaf:isPrimaryTopicOf	wikipedia-en:Protein_contact_map
is Link from a Wikipage to another Wikipage of	Rosetta@home Dot plot (bioinformatics) Protein structure reconstruction Protein tertiary structure Machine learning in bioinformatics

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