The 1943 Great Lakes Navy Bluejackets football team represented the United States Navy's Great Lakes Naval Training Station (Great Lakes NTS) during the 1943 college football season. The team compiled a 10–2 record, outscored opponents by a total of 257 to 108, and was ranked No. 6 in the final AP Poll. Tony Hinkle, who coached at Butler University before the war, was in his second season as head coach.