The 1999 North Carolina A&T Aggies football team represented North Carolina Agricultural and Technical State University in the 1999 NCAA Division I-AA football season. The team was led by head coach Bill Hayes and played their home games at Aggie Stadium in Greensboro, North Carolina, as a member of the Mid-Eastern Athletic Conference (MEAC). The Aggies finished the season 11–2 and 8–0 in MEAC play to win their 10th MEAC football championship. They received the conference's automatic bid to the FCS Playoffs where they lost in the Quarterfinals to Youngstown State. The team's performance earned them their third black college football national championship.