The 2012–13 version of the Jordan FA Cup was the 33rd edition to be played. It is the premier knockout tournament for football teams in Jordan. This season, the format had changed from a two-legged knockout competition to a group stage-based competition, similar to the 2011 Jordan FA Shield. Matches were played on a home-and-away basis. All twelve top flight clubs took part, divided into two groups of six teams. The cup winner is guaranteed a place in the 2014 AFC Cup.