The 2016–17 Morehead State Eagles men's basketball team represented Morehead State University during the 2016–17 NCAA Division I men's basketball season. The Eagles, led by interim head coach Preston Spradlin, played their home games at Ellis Johnson Arena in Morehead, Kentucky as members of the East Division of the Ohio Valley Conference. The Eagles finished the season 14–16, 10–6 in OVC play to finish in second place in the East Division. In the OVC tournament they lost to Murray State in the quarterfinals.