The 2016–17 San Francisco Dons men's basketball team represented the University of San Francisco during the 2016–17 NCAA Division I men's basketball season. It was head coach Kyle Smith's first season at San Francisco. The Dons played their home games at the War Memorial Gymnasium as members of the West Coast Conference. They finished the season 20–13, 10–8 in WCC play to finish in a tie for fourth place. They lost in the quarterfinals of the WCC tournament to Santa Clara. They were invited to the College Basketball Invitational where they lost in the first round to Rice.