The 2016 Morgan State Bears football team represented Morgan State University in the 2016 NCAA Division I FCS football season. They were led by interim head coach Frederick Farrier, who was appointed to the position after Lee Hull accepted a position with the Indianapolis Colts of the National Football League. The Bears played their home games at Hughes Stadium. They were a member of the Mid-Eastern Athletic Conference (MEAC). They finished the season 3–8, 3–5 in MEAC play to finish in a three-way tie for seventh place.