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About: Rhea (pipeline)     Goto   Sponge   NotDistinct   Permalink

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Rhea is a bioinformatic pipeline written in R language for the analysis of microbial profiles. It was released during the end of 2016 and it is publicly available through a GitHub repository. Starting with an Operational taxonomic unit (OTU) table, the pipeline contains scripts that perform the following common analytical steps: 1. * Normalization of the OTU table 2. * Calculation of the alpha diversity for each sample 3. * Calculation of beta diversity and visualization of the results with PCoA 4. * Taxonomic binning 5. * Statistical testing 6. * Correlation analysis