The 2012–13 Bavarian Cup (German: Bayerischer Toto-Pokal 2012–13) was the sixteenth edition of this competition, first held in 1998 and organised by the Bavarian Football Association (BFV). The winner, TSV 1860 Rosenheim of the Regionalliga Bayern, was qualified for the first round of the 2014–15 DFB-Pokal, the German Cup where it lost to 2. Bundesliga club VfR Aalen in the first round. The competition was open to all senior men's football teams playing within the Bavarian football league system and the 3. Liga.