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Statements

Subject Item
dbr:Metabolomic_Pathway_Analysis
rdf:type
wikidata:Q386724 n7:InformationObject dbo:Work owl:Thing dbo:Database schema:CreativeWork dbo:BiologicalDatabase
rdfs:label
Metabolomic Pathway Analysis
rdfs:comment
Metabolomic Pathway Analysis, shortened to MetPA, is a freely available, user-friendly web server to assist with the identification analysis and visualization of metabolic pathways using metabolomic data. MetPA makes use of advances originally developed for pathway analysis in microarray experiments and applies those principles and concepts to the analysis of metabolic pathways. For input, MetPA expects either a list of compound names (identified as statistically significant or significant perturbed) or a metabolite concentration table with phenotypic labels (i.e. sick vs. healthy). The list of compounds can include common names, HMDB IDs or KEGG IDs with one compound per row. Compound concentration tables must have samples in rows and compounds in columns. MetPA’s output is a series of ta
foaf:homepage
n12:metpa.metabolomics.ca
dc:description
For metabolomic data analysis – specifically for the identification of enriched or important pathways from multiple different organisms
dcterms:subject
dbc:Biological_databases
dbo:wikiPageID
42439027
dbo:wikiPageRevisionID
1062723979
dbo:wikiPageWikiLink
dbr:Human_Metabolome_Database dbr:Metabolic_pathways dbr:Microbes dbr:David_S._Wishart dbr:Metabolite_Set_Enrichment_Analysis dbr:Metabolic_pathway dbr:Organism dbr:Organisms dbr:MetaboAnalyst dbr:KEGG dbc:Biological_databases dbr:Mammals dbr:Metabolomic dbr:Microarray dbr:Metabolome dbr:Topological_data_analysis
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dbp:description
For metabolomic data analysis – specifically for the identification of enriched or important pathways from multiple different organisms
dbp:format
Data Input: Tables of metabolite names and/or concentrations; Data Output: Graphs and tables with embedded hyperlinks
dbp:frequency
-6.31152E7
dbp:title
Metabolomic Pathway Analysis
dbp:url
n12:metpa.metabolomics.ca
dbp:center
University of Alberta
dbo:abstract
Metabolomic Pathway Analysis, shortened to MetPA, is a freely available, user-friendly web server to assist with the identification analysis and visualization of metabolic pathways using metabolomic data. MetPA makes use of advances originally developed for pathway analysis in microarray experiments and applies those principles and concepts to the analysis of metabolic pathways. For input, MetPA expects either a list of compound names (identified as statistically significant or significant perturbed) or a metabolite concentration table with phenotypic labels (i.e. sick vs. healthy). The list of compounds can include common names, HMDB IDs or KEGG IDs with one compound per row. Compound concentration tables must have samples in rows and compounds in columns. MetPA’s output is a series of tables indicating which pathways are significantly enriched (along with accompanying statistics) as well as a variety of graphs or pathway maps illustrating where and how certain pathways were enriched. MetPA’s graphical output uses a colorful Google-Maps visualization system that allows simple, intuitive data exploration that lets users employ a computer mouse or track pad to select, drag and place images and to seamlessly zoom in and out. Users can explore MetPA’s output using three different views or levels: 1) a metabolome view; 2) a pathway view; 3) a compound view.
dbp:curation
Manually curated
dbp:laboratory
dbr:David_S._Wishart
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wikipedia-en:Metabolomic_Pathway_Analysis?oldid=1062723979&ns=0
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6942
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Metabolomic Pathway Analysis
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wikipedia-en:Metabolomic_Pathway_Analysis